vg::SnarlOrientedDistanceMeasurer Class Reference

#include <cluster.hpp>

Inheritance diagram for vg::SnarlOrientedDistanceMeasurer:

Public Member Functions
	SnarlOrientedDistanceMeasurer (SnarlDistanceIndex *distance_index)
	~SnarlOrientedDistanceMeasurer ()=default
	Default desctructor.
int64_t	oriented_distance (const pos_t &pos_1, const pos_t &pos_2)
vector< vector< size_t > >	get_buckets (const function< pos_t(size_t)> &get_position, size_t num_items)
vector< pair< size_t, size_t > >	exclude_merges (vector< vector< size_t > > &current_groups, const function< pos_t(size_t)> &get_position)
Public Member Functions inherited from vg::OrientedDistanceMeasurer
virtual	~OrientedDistanceMeasurer ()=default

Private Attributes
SnarlDistanceIndex *	distance_index = nullptr

Constructor & Destructor Documentation

SnarlOrientedDistanceMeasurer()

vg::SnarlOrientedDistanceMeasurer::SnarlOrientedDistanceMeasurer

(

SnarlDistanceIndex *

distance_index

)

~SnarlOrientedDistanceMeasurer()

vg::SnarlOrientedDistanceMeasurer::~SnarlOrientedDistanceMeasurer ( )

default

Default desctructor.

Member Function Documentation

exclude_merges()

vector< pair< size_t, size_t > > vg::SnarlOrientedDistanceMeasurer::exclude_merges ( vector< vector< size_t > > & current_groups, const function< pos_t(size_t)> & get_position )

virtual

Return a vector of pairs of groups (referred to by indexes in the current_groups vector) that cannot have finite distances between them (typically because they are on separate components).

Implements vg::OrientedDistanceMeasurer.

get_buckets()

vector< vector< size_t > > vg::SnarlOrientedDistanceMeasurer::get_buckets ( const function< pos_t(size_t)> & get_position, size_t num_items )

virtual

Return a vector of groups that we believe will have finite distances under this metric, can be empty.

Implements vg::OrientedDistanceMeasurer.

oriented_distance()

int64_t vg::SnarlOrientedDistanceMeasurer::oriented_distance ( const pos_t & pos_1, const pos_t & pos_2 )

virtual

Returns a signed distance, where positive indicates that pos_2 is to the right of pos_1, and negative indicates to the left. If the distance is infinite or can't be determined, returns numeric_limits<int64_t>::max().

Implements vg::OrientedDistanceMeasurer.

Member Data Documentation

distance_index

SnarlDistanceIndex* vg::SnarlOrientedDistanceMeasurer::distance_index = nullptr

private

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The documentation for this class was generated from the following files:

• src/cluster.hpp
• src/cluster.cpp